cd ~dmenemen/llc_4320/regions/Boxes/Box13
cvs co MITgcm_code

qsub -I -q long -l select=1:ncpus=20:model=ivy,walltime=120:00:00 -m abe

module purge
module load comp-intel/2016.2.181 mpi-sgi/mpt.2.14r19 hdf4/4.2.12
module load hdf5/1.8.18_mpt netcdf/4.4.1.1_mpt

cd ~dmenemen/llc_4320/regions/Boxes/Box13/MITgcm
mkdir build run

cd ~dmenemen/llc_4320/regions/Boxes/Box13/MITgcm/build
../tools/genmake2 -of ../tools/build_options/linux_amd64_ifort+mpi_ice_nas -mpi  -mods ../../code 
make depend
make -j 20

cd ~dmenemen/llc_4320/regions/Boxes/Box13/MITgcm/run
cp ../build/mitgcmuv .
ln -sf /nobackup/dmenemen/forcing/ECMWF_operational/* .
ln -sf /nobackup/dmenemen/forcing/ncep_rgau/runoff1p2472-360x180x12.bin .
ln -sf ../../run_template/* .
cp ../../input/* .
mpiexec -n 20 ./mitgcmuv

# Check that simulation is running:
tail -f STDOUT.0000 | grep advcfl_W