@string{angl = {Ann.\ Glaciol.}} @string{arfm = {Annu.~Rev.~Fluid Mech.}} @string{bams = {Bull.~Am.~Met.~Soc.}} @string{blm = {Bound.~Layer~Meteorol.}} @string{climd = {Clim.~Dynamics}} @string{cch = {Clim.\ Change}} @string{cup = {Cambridge University Press}} @string{dao = {Dyn.~Atmos.~Oceans}} @string{dkrz = {Deutsches Klimarechenzentrum (DKRZ)}} @string{dnmi = {The Norwegian Meteorological Institute (DNMI)}} @string{dsr = {Deep Sea Res.}} @string{ecmwf = {ECMWF}} @string{eos = {Eos~Trans.\ AGU}} @string{esa = {European Space Agency (ESA)}} @string{esapub = {ESA Publications Division, ESTEC, Noordwijk (NL)}} @string{estec = {European Space Research and Technology Centre (ESTEC)}} @string{gaos = {Global Atmos.~Ocean System}} @string{grl = {Geophys.~Res.~Lett.}} @string{ieee = {IEEE Trans.~Geosci. Remote Sensing}} @string{ifremer = {IFREMER/CERSAT}} @string{igarss = {IEEE Press, Piscataway, N.J., USA}} @string{jam = {J.~Appl.~Meteor.}} @string{jaot = {J.~Atmos.~Ocean.~Technol.}} @string{jas = {J.~Atmos.~Sci.}} @string{jclim = {J.~Clim.}} @string{jcp = {J.~Comput.~Phys.}} @string{jfm = {J.~Fluid Mech.}} @string{jgr = {J.~Geophys.~Res.}} @string{jgra = {J.~Geophys.~Res. Atmospheres}} @string{jgro = {J.~Geophys.~Res. Oceans}} @string{ijrs = {Int.~J.~Remote Sensing}} @string{jms = {J.~Mar.~Sys.}} @string{jmet = {J.~Meteor.}} @string{jpo = {J.~Phys.~Oceanogr.}} @string{mpi = {MPI f\"ur Meteorologie}} @string{mcp = {Meth. Comput. Phys.}} @string{mwr = {Mon.~Wea.~Rev.}} @string{om = {Ocean Modelling}} @string{os = {Ocean Science}} @string{ocn = {Oceanography}} @string{pf = {Physics of Fluids}} @string{pd = {Physica D.}} @string{ptrsl = {{Phil.~Trans.~R.~Soc.~Lond.}}} @string{rgsp = {{Rev.~Geophys.~Space~Phys.}}} @string{qjrms = {{Q.~J.~R.~Meteorol.~Soc.}}} @string{siscicom= {SIAM J.\ Sci.\ Comput.}} @string{tel = {Tellus}} @PhdThesis{adcroft:95, author = {Adcroft, A.}, title = {Numerical Algorithms for use in a Dynamical Model of the Ocean}, school = {Imperial College, London}, year = 1995 } @Article{adcroft:97, author = {Adcroft, A.J. and C.N. Hill and J. Marshall}, title = {Representation of topography by shaved cells in a height coordinate ocean model}, journal = mwr, year = 1997, volume = 125, pages = {2293-2315}, url = {http://mitgcm.org/pdfs/mwr_1997.pdf}, doi = {10.1175/1520-0493\%281997\%29125<2293:ROTBSC>2.0.CO;2}, } @Article{adcroft:98, author = {Adcroft, A.J. and D. Marshall}, title = {How slippery are piecewise-constant coastlines in numerical ocean models?}, journal = tel, year = 1998, volume = 50, number = 1, pages = {95-108}, } @Article{adcroft:99, author = {Adcroft, A., and C. Hill and J. Marshall}, title = {A new treatment of the Coriolis terms in C-grid models at both high and low resolutions}, journal = mwr, year = 1999, volume = 127, pages = {1928-1936}, url = {http://mitgcm.org/pdfs/mwr_1999.pdf}, doi = {10.1175/1520-0493\%281999\%29127<1928:ANTOTC>2.0.CO;2}, } @Article{adcroft:04a, author = {Adcroft, A. and J.-M. Campin}, title = {Re-scaled height coordinates for accurate representation of free-surface flows in ocean circulation models}, journal = om, year = 2004, volume = 7, pages = {269-284}, doi = {10.1016/j.ocemod.2003.09.003}, } @Article{adcroft:04b, author = {Adcroft, A. and J.-M. Campin and C. Hill and J. Marshall}, title = {Implementation of an Atmosphere-Ocean General Circulation Model on the Expanded Spherical Cube}, journal = mwr, year = 2004, volume = 132, pages = {2845-2863}, url = {http://mitgcm.org/pdfs/mwr_2004.pdf}, doi = {10.1175/MWR2823.1}, } @inproceedings{adcroft:04c, author = {Adcroft, A. and C. Hill and J.-M. Campin, and J. Marshall and P. Heimbach}, title = {Overview of the Formulation and Numerics of the {MIT}GCM}, booktitle = {Proceedings of the ECMWF seminar series on Numerical Methods, Recent developments in numerical methods for atmosphere and ocean modelling}, year = 2004, pages = {139-149}, url = {http://mitgcm.org/pdfs/ECMWF2004-Adcroft.pdf}, publisher = ecmwf } @Article{Albrecht:2011, AUTHOR = {Albrecht, T. and Martin, M. and Haseloff, M. and Winkelmann, R. and Levermann, A.}, TITLE = {Parameterization for subgrid-scale motion of ice-shelf calving fronts}, JOURNAL = {The Cryosphere}, VOLUME = {5}, YEAR = {2011}, NUMBER = {1}, PAGES = {35--44}, URL = {https://www.the-cryosphere.net/5/35/2011/}, DOI = {10.5194/tc-5-35-2011} } @Article{arakawa:77, author = {Arakawa, A. and V. Lamb}, title = {Computational design of the basic dynamical processes of the UCLA general circulation model}, journal = mcp, year = 1977, volume = 17, pages = {174-267}, } @article{bachman:17, author = {Bachman, Scott D. and Fox-Kemper, Baylor and Pearson, Brodie}, doi = {10.1002/2016JC012265}, isbn = {2169-9291}, issn = {21699291}, journal = {J. Geophys. Res. Ocean.}, number = {2}, pages = {1529--1554}, title = {{A scale-aware subgrid model for quasi-geostrophic turbulence}}, volume = {122}, year = {2017} } @Article{beckmann:99, author = {Beckmann, A. and H. H. Hellmer and R. Timmermann}, title = {A numerical model of the Weddell Sea: Large-scale circulation and water mass distribution}, journal = jgro, year = 1999, volume = 104, number = {C10}, pages = {23375–23391}, doi = {10.1029/1999JC900194}, } @Article{bitz:01, author = {Bitz, C.M. and M.M. Holland and A.J. Weaver and M. Eby}, title = {Simulating the ice-thickness distribution in a coupled climate model}, journal = jgr, year = 2001, volume = 106, pages = 2441, doi = {10.1029/1999JC000113}} @Article{bouillon13, author = {Bouillon, S. and T. Fichefet and V. Legat and G. Madec}, title = {The Elastic-Viscous-Plastic Method Revisited}, journal = om, volume = 71, number = 0, pages = {2--12}, year = 2013, note = {Arctic Ocean}, issn = {1463-5003}, doi = {10.1016/j.ocemod.2013.05.013}, url = {http://dx.doi.org/10.1016/j.ocemod.2013.05.013}, } @Article{bryan:63, author = {Bryan, K.}, title = {A numerical investigation of a nonlinear model of a wind-driven ocean}, journal = jas, volume = 20, pages = {594-606}, year = 1963, } @Article{bryan:72, author = {Bryan, K. and M.D. Cox}, title = {An approximate equation of state for numerical models of ocean circulation}, journal = jpo, volume = 2, pages = {510--514}, doi = {10.1175/1520-0485(1972)002<0510:AAEOSF>2.0.CO;2}, year = 1972, } @Article{bryan:75, author = {Bryan, K. and S. Manabe and R.C. Pacanowski}, title = {A global ocean-atmosphere climate model. Part II. The oceanic circulation}, journal = jpo, volume = 5, pages = {30--46}, year = 1975, } @Article{bryan:79, author = {Bryan, K. and L.J. Lewis}, title = {A water mass model of the world ocean}, journal = jgr, volume = 84, number = {C5}, pages = {2503--2517}, doi = {10.1029/JC084iC05p02503}, year = 1979, } <@techreport{burridge:77, author = {Burridge, D.M. and J. Haseler}, year = {1977}, title = {A Model for medium range weather forecasting: Adiabatic Formulation}, institution = {ECMWF}, type = {Technical Report}, number = {4}, address = {Bracknell, U.K.}, pages = {196 pp.}, url = {https://www.ecmwf.int/sites/default/files/elibrary/1977/8495-model-medium-range-weather-forecasts-adiabatic-formulation.pdf}, } @Article{cam:04, author = {Campin, J.-M. and A. Adcroft and C. Hill and J. Marshall}, title = {Conservation of properties in a free-surface model}, journal = om, volume = 6, pages = {221--244}, year = 2004 } @Article{cam:08, author = {Campin, J.-M. and J. Marshall and D. Ferreira}, title = {Sea-Ice Ocean Coupling Using a Rescaled Vertical Coordinate z$^\ast$}, journal = om, volume = 24, number = {1--2}, pages = {1--14}, doi = {10.1016/j.ocemod.2008.05.005}, year = 2008 } @Article{castro-morales14, author = {Castro-Morales, K. and F. Kauker and M. Losch and S. Hendricks and K. Riemann-Campe and R. Gerdes}, title = {Sensitivity of Simulated {A}rctic Sea Ice to Realistic Ice Thickness Distributions and Snow Parameterizations}, journal = jgro, year = 2014, volume = 119, number = 1, pages = {559--571}, url = {http://dx.doi.org/10.1002/2013JC009342}, doi = {10.1002/2013JC009342}, } @Article{chou:90, author = {Chou, M-D.}, year = {1990}, title = {Parameterizations for the absorption of solar radiation by O$_2$ and CO$_2$ with applications to climate studies.}, journal = jclim, volume = {3}, pages = {209-217} } @Article{chou:92, author = {Chou, M-D.}, year = {1992}, title = {A solar radiation model for use in climate studies.}, journal = jas, volume = {49}, pages = {762-772} } @techreport{chsz:94, author = {Chou, M-D. and M.J. Suarez}, year = {1994}, title = {An efficient thermal infrared radiation parameterization for use in general circulation models}, institution = {National Aeronautics and Space Administration}, type = {NASA Technical Memorandum}, number = {104606-Vol 3}, address = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA}, note = {http://www.gmao.nasa.gov/} } @Article{christianson:94, author = {Christianson, B.}, year = {1994}, title = {Reverse accumulation and attractive fixed points}, journal = {Optim. Method. Softw.}, volume = {9}, pages = {307-322}, doi = {10.1080/10556789408805572}, } @Article{clarke:70, author = {Clarke, R.H.}, year = {1970}, title = {Observational studies in the atmospheric boundary layer.}, journal = qjrms, volume = {96}, pages = {91-114} } @Article{cox87, author = {Cox, M.D.}, title = {An isopycnal diffusion in a z-coordinate ocean model}, journal = {Ocean modelling}, year = 1987, volume = 74, pages = {1-5 (Unpublished manuscript)} } @book{cushmanroisin:11, author = {Cushman-Roisin, B. and J.-M. Beckers}, title = {Introduction to Geophysical Fluid Dynamics, 2nd Edition}, year = 2011, publisher = {Academic Press}, address = {New York}, pages = {875 pp.}, } @Article{deftow:94, author = {Defries, R.S. and J.R.G. Townshend}, year = {1994}, title = {NDVI-derived Land Cover Classification at Global Scales. }, journal = {Int'l J. Rem. Sens.} , volume = {15}, pages = {3567-3586} } @Article{dorsell:89, author = {Dorman, J.L. and P.J. Sellers}, year = {1989}, title = {A global climatology of albedo, roughness length and stomatal resistance for atmospheric general circulation models as represented by the Simple Biosphere model (SiB).}, journal = jam, volume = {28}, pages = {833-855} } @ARTICLE{fla92, author = {Flato, G.M. and W.D. Hibler, III}, TITLE = {Modeling pack ice as a cavitating fluid}, JOURNAL = jpo, YEAR = 1992, VOLUME = 22, PAGES = {626-651} } @techreport{fofonoff:83, AUTHOR = {Fofonoff, P. and R. Millard, Jr.}, TITLE = {Algorithms for computation of fundamental properties of seawater}, type = {UNESCO Technical Papers in Marine Science}, number = 44, institution = {UNESCO}, address = {Paris}, YEAR = {1983}, } @Article{for-eta:15, author = {Forget, G. and Campin, J.-M. and Heimbach, P. and Hill, C. N. and Ponte, R. M and Wunsch, C.}, title = {{ECCO} version 4: an integrated framework for non-linear inverse modeling and global ocean state estimation}, journal = {Geoscientific Model Development}, volume = {8}, year = {2015}, number = {10}, pages = {3071--3104}, url = {http://www.geosci-model-dev.net/8/3071/2015/}, doi = {10.5194/gmd-8-3071-2015} } @article {fuku-etal:14, title = "A near-uniform fluctuation of ocean bottom pressure and sea level across the deep ocean basins of the Arctic Ocean and the Nordic Seas ", journal = "Progress in Oceanography ", volume = "134", number = "0", pages = "152 - 172", year = "2015", issn = "0079-6611", doi = "http://dx.doi.org/10.1016/j.pocean.2015.01.013", url = "http://www.sciencedirect.com/science/article/pii/S0079661115000245", author = "Ichiro Fukumori and Ou Wang and William Llovel and Ian Fenty and Gael Forget", } @Article{gas-eta:90, author = {Gaspar, P. and Y. Gr\'egoris and J.-M. Lefevre}, year = 1990, title = {A Simple Eddy Kinetic Energy Model for Simulations of the Oceanic Vertical Mixing: Tests at Station Papa and Long-Term Upper Ocean Study Site}, journal = jgr, volume = 95, number ={C9}, pages = {16,179--16,193}, doi = {10.1029/JC095iC09p16179}, } @Article{gen-eta:95, author = {Gent, P.R. and J. Willebrand and T.J. McDougall and J.C. McWilliams}, year = 1995, title = {Parameterizing eddy-induced tracer transports in ocean circulation models}, journal = jpo, volume = {25}, pages = {463--474}, } @Article{gen-mcw:90, author = {Gent, P.R. and J.C. McWilliams}, year = 1990, title = {Isopycnal mixing in ocean circulation models}, journal = jpo, volume = {20}, pages = {150--155}, } @Article{gkw:91, author = {Gerdes, R. and C. Koberle and J. Willebrand}, title = {The influence of numerical advection schemes on the results of ocean general circulation models}, journal = climd, year = 1991, volume = 5, number = 4, pages = {211-226}, doi = {10.1007/BF00210006} } @Article{giering:98, author = {Giering, R. and T. Kaminski}, title = {Recipes for adjoint code construction}, journal = {ACM Transactions on Mathematical Software}, year = 1998, volume = 24, number = 4, pages = {437-474}, doi = {10.1145/293686.293695} } @InCollection{giering:00, author = {Giering, R.}, title = {Tangent linear and adjoint biogeochemical models}, booktitle = {Inverse Methods in Global Biogeochemical Cycles}, pages = {33-48}, publisher = {American Geophysical Union}, address = {Washington, D.C.}, year = 2000, doi = {10.1029/GM114p0033}, editor = {P. Kasibhatla and M. Heimann and P. Rayner and N. Mahowald and R. G. Prinn and D. E. Hartley} } @Article{gil-lem:89, author = {J.C. Gilbert and C. Lemar\'echal}, year = 1989, title = {Some numerical experiments with variable-storage quasi-Newton algorithms}, journal = {Math. Programming}, volume = {45}, pages = {407--435}, doi = {10.1007/BF01589113}, } @book{gill:82, author = {Gill, A.E.}, title = {Atmosphere-Ocean Dynamics}, year = 1982, publisher = {Academic Press}, address = {New York}, pages = {662 pp.}, } @Article{goldberg:2011, author = {Goldberg, D.N.}, title = {A variationally-derived, depth-integrated approximation to a higher-order glaciologial flow model}, journal = {J. of Glaciology}, YEAR = 2011, volume = 57, issue = 201, pages = {157--170} } @Article{goldberg_heimbach:2013, author = {Goldberg, D.N. and P. Heimbach}, title = {Parameter and state estimation with a time-dependent adjoint marine ice sheet model}, journal = {The Cryosphere}, YEAR = 2013, volume = 7, pages = {1659--1678} } @Article{Goldberg:2015, author = {Goldberg, D.N. and P. Heimbach and I. Joughin and B. Smith}, title = {Committed retreat of Smith, Pope, and Kohler Glaciers over the next 30 years inferred by transient model calibration}, year = 2015, journal = {The Cryosphere}, volume = 9, pages = {2429--2446} } @Article{goldberg_openad_fixed:2016, author = {Goldberg, D.N. and S.H.K. Narayanan and L. Hascoet and J. Utke}, title = {An optimized treatment for algorithmic differentiation of an important glaciological fixed-point problem}, journal = {Geoscientific Model Development}, YEAR = 2016, volume = 9, pages = {1891--1904} } @Article{griewank:92, author = {Griewank, A.}, title = {Achieving logarithmic growth of temporal and spatial complexity in reverse Automatic Differentiation}, journal = {Optimization Methods and Software}, year = 1992, volume = 1, pages = {35-54} } @book{griewank:08, author = {Griewank, A. and A. Walther}, title = {Evaluating Derivatives: Principles and Techniques of Algorithmic Differentiation, Second Edition}, year = 2008, publisher = {SIAM}, address = {Philadelphia}, pages = {426 pp.}, } @ARTICLE{gr:98, author = {Griffies, S.M.}, title = {The {Gent-McWilliams} Skew Flux}, journal = jpo, year = 1998, volume = 28, pages = {831-841} } @Article{gretal:98, author = {Griffies, S.M. and A. Gnanadesikan and R.C. Pacanowski and V. Larichev and J.K. Dukowicz and R.D. Smith}, title = {Isoneutral diffusion in a z-coordinate ocean model}, journal = jpo, year = 1998, volume = 28, pages = {805-830} } @Article{griffies:00, author = {Griffies, S.M. and R.W. Hallberg}, title = {Biharmonic friction with a Smagorinsky-like viscosity for use in large-scale eddy-permitting ocean models}, journal = mwr, year = 2000, volume = 128, number = 8, pages = {2935-2946} } @Article{grosfeld:97, author = {Grosfeld, K. and R. Gerdes and J. Determann}, title = {Thermohaline circulation and interaction between ice shelf cavities and the adjacent open water}, journal = jgro, year = 1997, volume = 102, number = {C7}, pages = {15595-15610}, doi = {10.1029/97JC00891}, } @Article{harlow:65, author = {Harlow, F.H. and J.E. Welch}, title = {Numerical Calculation of Time-Dependent Viscous Incompressible Flow of Fluid with Free Surface}, journal = pf, year = 1965, volume = 8, pages = {2182-2189} } @Article{held-suar:94, author = {Held, I.M. and M.J. Suarez}, year = {1994}, title = {A proposal for the intercomparison of the dynamical cores of atmospheric general circulation models}, journal = {Bulletin of the American Meteorological Society}, volume = {75(10)}, pages = {1825-1830} } @article{heim-eta:11, title = {Timescales and regions of the sensitivity of {Atlantic} meridional volume and heat transport: Toward observing system design}, author = {Heimbach, Patrick and Wunsch, Carl and Ponte, Rui M and Forget, Gael and Hill, Chris and Utke, Jean}, journal = {Deep Sea Research Part II: Topical Studies in Oceanography}, volume = {58}, number = {17}, pages = {1858--1879}, year = {2011}, publisher = {Elsevier} } @InCollection{hill:95, author = {Hill, C. and J. Marshall}, title = {Application of a Parallel Navier-Stokes Model to Ocean Circulation in Parallel Computational Fluid Dynamics}, booktitle = {Implementations and Results Using Parallel Computers}, pages = {545-552}, publisher = {Elsevier Science B.V.: New York}, year = 1995, editor = {A. Ecer, J. Periaux, N. Satofuka and S. Taylor} } @Article{helflab:88, author = {Helfand, H.M. and J.C. Labraga}, year = {1988}, title = { Design of a non-singular level 2.5 second-order closure model for the prediction of atmospheric turbulence. }, journal = jas, volume = {45}, pages = {113-132} } @Article{helfschu:95, author = {Helfand, H.M. and S.D. Schubert}, year = {1995}, title = { Climatology of the Simulated Great Plains Low-Level Jet and Its contribution to the Continental Moisture Budget of the United States. }, journal = jclim, volume = {8}, pages = {784-806} } @Article{hellmer:89, author = {Hellmer, H. H., and D. J. Olbers}, year = {1989}, title = {A two-dimensional model of the thermohaline circulation under an ice shelf}, journal = {Antarct. Sci.}, volume = {1}, number = 4, pages = {325-336}, doi = {10.1017/S0954102089000490}, } @ARTICLE{hib79, author = {Hibler, III, W.D.}, TITLE = "A Dynamic Thermodynamic Sea Ice Model", JOURNAL = jpo, YEAR = 1979, VOLUME = 9, PAGES = {815-846} } @Article{hib80, author = {Hibler, III, W.D.}, title = {Modeling a Variable Thickness Sea Ice Cover}, journal = mwr, year = 1980, volume = 1, pages = {1943--1973} } @InCollection{hibler84, author = {Hibler, III, W.D.}, title = {The role of sea ice dynamics in modeling CO2 increases}, booktitle = {Climate processes and climate sensitivity}, pages = {238--253}, publisher = {AGU}, year = 1984, editor = {J. E. Hansen and T. Takahashi}, volume = 29, series = {Geophysical Monograph}, address = {Washington, D.C.} } @Article{hibler87, author = {Hibler, III, W.D. and K. Bryan}, title = {A Diagnostic Ice-Ocean Model}, journal = jpo, year = 1987, volume = 17, number = 7, pages = {987--1015} } @InProceedings{hill:99, author = {Hill, C. and A. Adcroft and D. Jamous and J. Marshall}, title = {A Strategy for Terascale Climate Modeling}, booktitle = {In Proceedings of the Eighth ECMWF Workshop on the Use of Parallel Processors in Meteorology}, year = 1999, pages = {406-425}, publisher = {World Scientific}, } @InProceedings{hoe:99, author = {Hoe, J. C. and C. Hill and A. Adcroft}, title = {A personal supercomputer for climate research}, booktitle = {SC’99: Proceedings of the 1999 ACM/IEEE Conference on Supercomputing}, year = 1999, doi = {10.1109/SC.1999.10009}, pages = {59}, publisher = {IEEE}, } @Article{holland:78, author = {Holland, W.R.}, year = {1978}, title = {The role of mesoscale eddies in the general circulation of the ocean-numerical experiments using a wind-driven quasi-geostrophic model}, journal = jpo, volume = {8}, pages = {363-392} } @Article{holland:99, author = {Holland, D.M and A. Jenkins}, year = {1999}, title = {Modeling Thermodynamic Ice–Ocean Interactions at the Base of an Ice Shelf}, journal = jpo, volume = {29}, pages = {1787-1800}, doi = {10.1175/1520-0485(1999)029<1787:MTIOIA>2.0.CO;2}, } @Article{hun97, author = {Hunke, E.C. and J.K. Dukowicz}, title = {An elastic-viscous-plastic model for sea ice dynamics}, journal = jpo, year = 1997, volume = 27, pages = {1849--1867} } @Article{hun01, author = {Hunke, E.C.}, title = {Viscous-Plastic Sea Ice Dynamics with the {EVP} Model: Linearization Issues}, journal = jcp, year = 2001, volume = 170, pages = {18--38}, doi = {10.1006/jcph.2001.6710} } @Article{hutchings04, author = {Hutchings, J.K. and H. Jasak and S.W. Laxon}, title = {A Strength Implicit Correction Scheme for the Viscous-Plastic Sea Ice Model}, journal = om, year = 2004, volume = 7, number = {1--2}, pages = {111-133}, doi = {10.1016/S1463-5003(03)00040-4} } @techreport{ioc:10, author = {IOC, and SCOR and IAPSO}, year = {2010}, institution = {UNESCO (English)}, address = {Paris, France}, pages = {196 pp.}, title = {The International Thermodynamic Equation of Seawater 2010 (TEOS-10): Calculation and Use of Thermodynamic Properties}, type = {Intergovernmental Oceanographic Commission, Manuals and Guides}, number = {56}, url = {http://www.teos-10.org/pubs/TEOS-10_Manual.pdf}, } @Article{jackett:95, author = {Jackett, D. R. and T. J. McDougall}, title = {Minimal adjustment of hydrographic profiles to achieve static stability}, journal = jaot, year = 1995, volume = 12, number = {4}, pages = {381-389}, } @Article{jenkins:01, author = {Jenkins, A. and H. H. Hellmer and D. M. Holland}, title = {The role of meltwater advection in the formulation of conservative boundary conditions at an ice-ocean interface}, journal = jpo, year = 2001, volume = 31, pages = {285-296}, doi = {10.1175/1520-0485(2001)031<0285:TROMAI>2.0.CO;2}, } @Article{kimmritz15, author = {Kimmritz, M. and S. Danilov and M. Losch}, title = {On the Convergence of the Modified Elastic-Viscous-Plastic Method of Solving for Sea-Ice Dynamics}, journal = jcp, year = 2015, volume = 296, pages = {90--100}, doi = {10.1016/j.jcp.2015.04.051}} @Article{kimmritz16, author = {Kimmritz, M. and S. Danilov and M. Losch}, title = {The Adaptive {EVP} Method for Solving the Sea Ice Momentum Equation}, journal = om, year = 2016, volume = 101, doi = {10.1016/j.ocemod.2016.03.004}, pages = {59--67}} @Article{klymaklegg10, author = {Klymak, J.M. and S.M. Legg}, title = {A simple mixing scheme for models that resolve breaking internal waves}, journal = om, year = 2010, volume = 33, pages = {224--234}, doi = {10.1016/j.ocemod.2010.02.005} } @Article{kondo:75, author = {Kondo, J.}, year = {1975}, title = {Air-sea bulk transfer coefficients in diabatic conditions.}, journal = blm, volume = {9}, pages = {91-112} } @techreport{ks:91, author = {Koster, R.D. and M.J. Suarez}, year = {1991}, title = {A Simplified Treatment of SiB's Land Surface Albedo Parameterization.}, institution = {National Aeronautics and Space Administration}, type = {NASA Technical Memorandum}, number = {104538}, address = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA}, note = {http://www.gmao.nasa.gov/}, } @Article{ks:92, author = {Koster, R.D. and M.J. Suarez}, year = {1992}, title = {Modeling the Land Surface Boundary in Climate Models as a Composite of Independent Vegetation Stands.}, journal = jgr, volume = {97}, number = {D3}, pages = {2697-2715}, doi = {10.1029/91JD01696}, } @Article{lar-eta:94, author = {Large, W.G. and J.C. McWilliams and S.C. Doney}, year = 1994, title = {Oceanic vertical mixing: A review and a model with nonlocal boundary layer parameterization}, journal = {Rev.~Geophys.}, volume = {32}, pages = {363--403}, } @Article{lar-eta:97, author = {Large, W.G. and G. Danabasoglu and S.C. Doney and J.C. McWilliams}, year = 1997, title = {Sensitivity to surface forcing and boundary layer mixing in a global ocean model: Annual-mean climatology}, journal = jpo, volume = {27}, number = 11, pages = {2418--2447}, } @Article{larpond:81, author = {Large, W.G. and S. Pond}, year = {1981}, title = {Open ocean momentum flux measurements in moderate to strong winds}, journal = jpo, volume = {11}, pages = {324-336} } @Article{leith:68, author = {Leith, C.E.}, year = {1968}, title = {Large eddy simulation of complex engineering and geophysical flows}, journal = pf, volume = {10}, pages = {1409-1416} } @Article{leith:96, author = {Leith, C.E.}, year = {1996}, title = {Stochastic models of chaotic systems}, journal = pd, volume = {98}, pages = {481-491} } @Article{lemieux10, author = {Lemieux, J.-F. and B. Tremblay and J. Sedl{\'a}{\v{c}}ek and P. Tupper and S. Thomas and D. Huard and J.-P. Auclair}, title = {Improving the Numerical Convergence of Viscous-Plastic Sea Ice Models with the {J}acobian-Free {N}ewton-{K}rylov Method}, journal = jcp, year = 2010, volume = 229, pages = {2840--2852}, doi = {10.1016/j.jcp.2009.12.011c}} @Article{lemieux12, author = {Lemieux, J.-F. and D. Knoll and B. Tremblay and D.M. Holland and M. Losch}, title = {A Comparison of the {J}acobian-free {N}ewton-{K}rylov Method and the {EVP} Model for Solving the Sea Ice Momentum Equation with a Viscous-Plastic Formulation: a Serial Algorithm Study}, journal = jcp, year = 2012, volume = 231, number = 17, pages = {5926--5944}, doi = {10.1016/j.jcp.2012.05.024}} @Article{leppaeranta83, author = {Lepp{\"a}ranta, M.}, title = {A Growth Model for Black Ice, Snow Ican and Snow Thickness in Subarctic Basins}, journal = {Nordic Hydrology}, year = 1983, volume = 14, pages = {59--70} } @Article{lhans:74, author = {Lacis, A.A. and J.E. Hansen}, year = {1974}, title = { A parameterization for the absorption of solar radiation in the Earth's atmosphere. }, journal = jas, volume = {31}, pages = {118-133} } @Article{lipscomb:01, author = {Lipscomb, W.H.}, title = {Remapping the thickness distribution in sea ice models}, journal = jgr, year = 2001, volume = 106, number = {C7}, pages = {13989--14000}, doi = {10.1029/2000JC000518}} @Article{lipscomb:07, author = {Lipscomb, W.H. and E.C. Hunke and W. Maslowski and J. Jakacki}, title = {Ridging, strength, and stability in high-resolution sea ice models}, journal = jgr, year = 2007, volume = 112, pages = {1--18}, doi = {10.1029/2005JC003355}} @Article{losch:08, author = {Losch, M.}, title = {Modeling ice shelf cavities in a z-coordinate ocean general circulation model}, journal = jgro, year = 2008, volume = 113, number = {C08043}, pages = {129--144}, doi = {10.1029/2007JC004368} } @Article{losch:10, author = {Losch, M. and D. Menemenlis and J.-M. Campin and P. Heimbach and C. Hill}, title = {On the formulation of sea-ice models. {P}art 1: Effects of different solver implementations and parameterizations}, journal = om, year = 2010, volume = 33, number = {1--2}, pages = {129--144}, doi = {10.1016/j.ocemod.2009.12.008} } @Article{losch:14, author = {Losch, M. and A. Fuchs and J.-F. Lemieux and A. Vanselow}, title = {A Parallel {J}Acobian-Free {N}ewton-{K}rylov Solver for a Coupled Sea Ice-Ocean Model }, journal = jcp, volume = {257}, number = {A}, pages = {901--910}, year = {2014}, doi = {10.1016/j.jcp.2013.09.026} } @Article{Macayeal:89, author = {MacAyeal, D.R.}, title = {Large-scale ice flow over a viscous basal sediment: Theory and application to {I}ce {S}tream {B}, {A}ntarctica}, year = 1989, journal = {Journal of Geophysical Research -- Solid Earth}, volume = 94, pages = {4071--4087} } @Article{manabe:79, author = {Manabe, S. and K. Bryan and M.J. Spelman}, title = {A Global Ocean-Atmosphere Climate Model with Seasonal Variation for Future Studies of Climate Sensitivity}, journal = dao, year = 1979, volume = 3, pages = {393--426}, doi = {10.1016/0377-0265(79)90021-6} } @Article{maro-eta:99, author = {Marotzke, J. and R. Giering and K.Q. Zhang and D. Stammer and C. Hill and T. Lee}, year = 1999, title = {Construction of the adjoint MIT ocean general circulation model and application to Atlantic heat transport variability}, journal = jgr, volume = {104}, number = {C12}, pages = {29,529--29,547}, doi = {10.1029/1999JC900236}, } @Article{mars-eta:98, author = {Marshall, J. and H. Jones and C. Hill}, year = 1998, title = {Efficient ocean modeling using non-hydrostatic algorithms}, journal = jms, volume = {18}, pages = {115--134}, url = {http://mitgcm.org/pdfs/journal_of_marine_systems_1998.pdf}, doi = {10.1016/S0924-7963\%2898\%2900008-6}, } @Article{marshall:97a, author = {Marshall, J. and C. Hill and L. Perelman and A. Adcroft}, title = {Hydrostatic, quasi-hydrostatic, and nonhydrostatic ocean modeling}, journal = jgr, year = 1997, volume = 102, number = {C3}, pages = {5733-5752}, doi = {10.1029/96JC02776}, url = {http://mitgcm.org/pdfs/96JC02775.pdf}, } @Article{marshall:97b, author = {Marshall, J. and A. Adcroft and C. Hill and L. Perelman and C. Heisey}, title = {A finite-volume, incompressible Navier Stokes model for studies of the ocean on parallel computers}, journal = jgr, year = 1997, volume = 102, number = {C3}, pages = {5753-5766}, doi = {10.1029/96JC02775}, url = {http://mitgcm.org/pdfs/96JC02776.pdf}, } @Article{marshall:04, author = {Marshall, J. and A. Adcroft and J.-M. Campin and C. Hill and A. White}, title = {Atmosphere-Ocean Modeling Exploiting Fluid Isomorphisms}, journal = mwr, year = 2004, volume = 132, pages = {2882-2894}, url = {http://mitgcm.org/pdfs/a_o_iso.pdf}, doi = {10.1175/MWR2835.1}, } @Article{mcdougall:03, author = {McDougall, T. J. and D. R. Jackett and D. G. Wright and R. Feistel}, title = {Accurate and computationally efficient algorithms for potential temperature and density of seawater}, journal = jaot, year = 2003, volume = 5, pages = {730-741}, } @techreport{mcdougall:11, author = {McDougall, T. and P. M. Barker}, year = {2011}, institution = {SCOR/IAPSO WG127}, pages = {28 pp.}, title = {Getting started with TEOS-10 and the Gibbs Seawater (GSW) Oceanographic Toolbox}, type = {ISBN 978-0-646-55612-5}, url = {http://www.teos-10.org/pubs/gsw/pdf/Getting_Started.pdf}, } @Article{millero:10, author = {Millero, F. J.}, title = {History of the equation of state of seawater}, journal = ocn, year = 2010, volume = 23, doi = {10.5670/oceanog.2010.21}, pages = {18-33}, } @Article{mol:09, author = {Molod, A.}, year = 2009, title = {Running {GCM} physics and dynamics on different grids: algorithm and tests}, journal = tel, volume = {61A}, pages = {381--393}, } @Article{moorsz:92, author = {Moorthi, S. and M.J. Suarez}, year = {1992}, title = { Relaxed Arakawa Schubert: A parameterization of moist convection for general circulation models.}, journal = mwr, volume = {120}, pages = {978-1002} } @Article{moum96, author = {Moum, J.N.}, title = {Energy-containing scales of turbulence in the ocean thermocline}, journal = jgr, year = 1996, volume = {101}, number = {C6}, doi = {10.1029/96JC00507}, pages = {14095--14109} } @Article{munk:50, author = {Munk, W.H.}, title = {On the wind-driven ocean circulation}, journal = jmet, year = 1950, volume = {7}, pages = {79-932} } @InCollection{naumann:06, author = {Naumann, U. and J. Utke and P. Heimbach and C. Hill and D. Ozyurt and C. Wunsch and M. Fagan and N. Tallent and and M. Strout}, title = {Adjoint code by source transformation with {O}pen{AD}/{F}}, booktitle = {European Conference on Computational Fluid Dynamics (ECCOMAS CFD 2006)}, publisher = {TU Delft}, address = {The Netherlands}, year = 2006, editor = {Pieter Wesseling and Jacques P\'eriaux and Eugenio O{\~n}ate}, note = {Available online at \url{http://proceedings.fyper.com/eccomascfd2006/documents/35.pdf}}, } @Article{orl:76, author = {Orlanski, I.}, year = 1976, title = {A simple boundary condition for unbounded hyperbolic flows}, journal = jcp, volume = {21}, pages = {251--269}, } @Article{pal-rom:97, author = {Paluszkiewicz, T. and R.D. Romea}, year = 1997, title = {A one-dimensional model for the parameterization of deep convection in the ocean}, journal = dao, volume = {26}, pages = {95--130}, } @incollection{pano:73, author = {Panofsky, H.A.}, year = {1973}, title = {Tower Micrometeorology. }, booktitle = {Workshop on Micrometeorology}, editor = {D. A. Haugen}, publisher = {American Meteorological Society} } @Article{parkinson:79, author = {Parkinson, Claire~L. and Washington, Warren~M.}, title = {A Large-Scale Numerical Model of Sea Ice}, journal = jgr, year = 1979, month = jan, volume = 84, number = {C1}, pages = {311--337}, doi = {10.1029/JC084iC01p00311} } @book{pedlosky:87, author = {Pedlosky, J.}, title = {Geophysical Fluid Dynamics, Second Edition}, year = 1987, publisher = {Spring-Verlag}, address = {New York}, pages = {710 pp.}, } @book{potter:73, author = {Potter, D.}, title = {Computational Physics}, year = 1973, publisher = {John Wiley}, address = {New York}, pages = {304 pp.}, } @Article{prather:86, author = {Prather, M.J.}, year = {1986}, title = {Numerical advection by conservation of second-order moments}, journal = jgr, volume = 91, number = {D6}, pages = {6671-6681}, doi = {10.1029/JD091iD06p06671} } @article{redi1982, abstract = {Current numerical models of oceanic circulation differentiate between the eddy diffusion and viscosity transport along the geopotential horizontal and vertical directions only. In order to model the effect of anisotropic turbulence as diffusive transport along and across}, author = {Redi, M.H.}, doi = {10.1175/1520-0485(1982)012<1154:OIMBCR>2.0.CO;2}, isbn = {0022-3670}, issn = {0022-3670}, journal = jpo, month = {oct}, number = {10}, pages = {1154--1158}, title = {{Oceanic Isopycnal Mixing by Coordinate Rotation}}, volume = {12}, year = {1982} } @Article{restrepo:98, author = {Restrepo, J. and G. Leaf and A. Griewank}, year = {1998}, title = {Circumventing storage limitations in variational data assimilation studies}, journal = {SIAM J. Sci. Comput.}, volume = {19}, pages = {1586-1605} } @Incollection{roe:85, author = {Roe, P.L.}, year = 1985, title = {Some contributions to the modelling of discontinuous flows}, booktitle = {Large-Scale Computations in Fluid Mechanics}, series = {Lectures in Applied Mathematics}, volume = 22, pages = {163--193}, editor = {B.E. Engquist and S. Osher and R.C.J. Somerville}, publisher = {American Mathematical Society}, address = {Providence, RI}, } @Article{roquet:15, author = {Roquet, F. and G. Madec and T. J. McDougall and P. M. Barker}, year = 2015, title = {Accurate polynomial expressions for the density and specific volume of seawater using the TEOS-10 standard}, journal = om, volume = {90}, pages = {29-43}, doi = {10.1016/j.ocemod.2015.04.002}, } @Article{rosen:87, author = {Rosenfield, J.E. and M.R. Schoeberl and M.A. Geller}, year = {1987}, title = {A computation of the stratospheric diabatic circulation using an accurate radiative transfer model}, journal = jas, volume = {44}, pages = {859-876} } @Article{rothrock:75, author = {Rothrock, D.A.}, title = {The energetics of the plastic deformation of pack ice by ridging}, journal = jgr, year = 1975, volume = 80, number = 33, pages = {4514--4519}, doi = {10.1029/JC080i033p04514}} @Article{sadourny:75, author = {Sadourny, R.}, year = {1975}, title = {The Dynamics of Finite-Difference Models of the Shallow-Water Equations}, journal = jas, volume = {32}, doi = {10.1175/1520-0469(1975)032<0680:TDOFDM>2.0.CO;2 }, pages = {680-689} } @Article{seimgregg94, author = {Seim, H.E. and M.C. Gregg}, title = {Detailed observations of a naturally occurring shear instability}, journal = jgr, year = 1994, volume = 99, number = {C5}, doi = {10.1029/94JC00168}, pages = {10049--10073}, } @Article{stevens:90, author = {Stevens, D.P.}, title = {On Open Boundary Conditions for Three Dimensional Primitive Equation Ocean Circulation Models}, journal = {Geophys. Astrophys. Fl. Dyn.}, year = 1990, volume = 51, pages = {103--133} } @Article{sem76, author = {Semtner, Jr., A.J.}, title = {A model for the thermodynamic growth of sea ice in numerical investigations of climate}, journal = jpo, year = 1976, volume = 6, pages = {379--389} } @Article{shapiro:70, author = {Shapiro, R.}, title = {Smoothing, filtering, and boundary effects}, journal = rgsp, year = 1970, volume = {8}, number = {2}, pages = {359--387} } @Article{smag:63, author = {Smagorinsky, J.}, title = {General circulation experiments with the primitive equations I: The basic experiment}, journal = mwr, year = 1963, volume = {91}, number = {3}, pages = {99--164} } @InCollection{smag:93, author = {Smagorinsky, J.}, title = {Large eddy simulation of complex engineering and geophysical flows}, booktitle = {Evolution of Physical Oceanography}, pages = {3-36}, publisher = {Cambridge University Press}, year = 1993, editor = {B. Galperin and S.A. Orszag} } @Article{smolark:89, author = {Smolarkiewicz, P.K.}, title = {Comment on "A positive definite advection scheme obtained by nonlinear renormalization of the advective fluxes"}, journal = mwr, year = 1989, volume = {117}, number = {11}, doi = {10.1175/1520-0493(1989)117<2626:COPDAS>2.0.CO;2}, pages = {2626--2632} } @techreport{stammer:97, author = {Stammer, D. and C. Wunsch and R. Giering and Q. Zhang and J. Marotzke and J. Marshall and C. Hill}, year = {1997}, title = {The global ocean circulation estimated from {TOPEX}/{POSEIDON} altimetry and a general circulation model}, institution = {Massachusetts Institute of Technology}, type = {CGCS Report Series}, number = {49}, address = {Cambridge, MA}, url = {https://cgcs.mit.edu/publications/cgcs-report/global-ocean-circulation-estimated-topexposeidon-altimetry-and-mit-general}, } @Article{stammer:02, author = {Stammer, D. and C. Wunsch and R. Giering and C. Eckert and P. Heimbach and J. Marotzke and A. Adcroft and C. Hill and J. Marshall}, title = {The global ocean circulation and transports during 1992 - 1997, estimated from ocean observations and a general circulation model}, journal = jgr, year = 2002, volume = {107}, number = {C9}, pages = {3118}, doi = {10.1029/2001JC000888}, } @Article{stommel:48, author = {Stommel, H.}, year = 1948, title = {The western intensification of wind-driven ocean currents}, journal = {Trans. Am. Geophys. Union}, volume = {29}, pages = {206}, } @Article{sudm:88, author = {Sud, Y.C. and A. Molod}, year = {1988}, title = { The roles of dry convection, cloud-radiation feedback processes and the influence of recent improvements in the parameterization of convection in the GLA GCM. }, journal = mwr, volume = {116}, pages = {2366-2387} } @techreport{taksz:96, author = {Takacs, L.L. and M.J. Suarez}, year = {1996}, title = {Dynamical aspects of climate simulations Using the GEOS General Circulation Model}, institution = {National Aeronautics and Space Administration}, type = {NASA Technical Memorandum}, number = {104606 Volume 10}, address = {NASA; Goddard Space Flight Center; Greenbelt (MD), 20771; USA}, note = {http://www.gmao.nasa.gov/}, } @Article{thorndike:75, AUTHOR = {Thorndike, A.S. and D.A. Rothrock and G.A. Maykut and R. Colony}, YEAR = 1975, TITLE = {The thickness distribution of sea ice}, JOURNAL = jgr, VOLUME = 80, PAGES = {4501--4513} } @Article{thorpe77, author = {Thorpe, S.A.}, title = {Turbulence and mixing in a Scottish loch}, journal = ptrsl, year = 1977, volume = {286}, pages = {125--181} } @Article{ungermann:17, author = {Ungermann, M. and L.B. Tremblay and T. Martin and M. Losch}, title = {Impact of the Ice Strength Formulation on the Performance of a Sea Ice Thickness Distribution Model in the {A}rctic}, year = 2017, journal = jgr, volume = 122, number = 3, issn = {2169-9291}, url = {http://dx.doi.org/10.1002/2016JC012128}, doi = {10.1002/2016JC012128}, pages = {2090--2107}, keywords = {Sea ice, Modeling, Distribution, cost function, coupled sea ice-ocean model, Arctic, ice strength parameterization, MITgcm, Green's function approach}, } @Article{utke:08, author = {Utke, J. and U. Naumann and M. Fagan and N. Tallent and M. Strout and P. Heimbach and C. Hill and C. Wunsch}, year = 2008, title = {{OpenAD/F}: A modular open-source tool for automatic differentiation of Fortran codes}, journal = {ACM Transactions on Mathematical Software (TOMS)}, volume = {34}, number = 4, pages = {18}, doi = {10.1145/1377596.1377598}, } @Article{visbeck:97, author = {Visbeck, M. and J. Marshall and T. Haine and M. Spall}, title = {Specification of eddy transfer coefficients in coarse-resolution ocean circulation models}, journal = jpo, year = 1997, volume = 27, number = 3, pages = {381-402} } @book{vallis:17, author = {Vallis, G.K.}, title = {Atmospheric and Oceanic Fluid Dynamics: Fundamentals and Large-Scale Circulation, 2nd Edition}, year =17, publisher = {Cambridge University Press}, pages = {964 pp.}, doi = {10.1017/9781107588417} } @Article{wajsowicz:93, author = {Wajsowicz, R.}, title = {A consistent formulation of the anisotropic stress tensor for use in models of the large-scale ocean circulation}, journal = jcp, year = 1993, volume = 105, number = 2, pages = {333-338} } @Article{wesson94, author = {Wesson, J.C. and M.C. Gregg}, title = {Mixing at Camarinal Sill in the Strait of Gibraltar}, journal = qjrms, year = 1994, volume = {99 (C5)}, pages = { 9847--9878} } @Article{white:95 author = {White, A.A. and R.A. Bromley}, title = {Dynamically consistent, quasi-hydrostatic equations for global models with a complete representation of the Coriolis force}, journal = qjrms, year = 1995, volume = {121}, doi = {10.1002/qj.49712152208}, pages = { 399--418} } @Article{williams:69, author = {Williams, G.P.}, title = {Numerical integration of the three-dimensional Navier Stokes equations for incompressible flow}, journal = jfm, year = 1969, volume = 37, pages = {727--750} } @Article{win00, author = {Winton, M.}, title = {A reformulated three-layer sea ice model}, journal = jaot, year = 2000, volume = 17, pages = {525--531} } @Article{yagkad:74, author = {Yaglom, A.M. and B.A. Kader}, year = {1974}, title = {Heat and mass transfer between a rough wall and turbulent fluid flow at high Reynolds and Peclet numbers. }, journal = jfm, volume = {62}, pages = {601-623} } v@Article{yam:77, author = {Yamada, T.}, year = {1977}, title = { A numerical experiment on pollutant dispersion in a horizontally-homogenious atmospheric boundary layer.}, journal = {Atmos. Environ.}, volume = {11}, pages = {1015-1024} } @Article{zhang97, author = {Zhang, J. and Hibler, III, W.D.}, title = {On an Efficient Numerical Method for Modeling Sea Ice Dynamics}, journal = jgr, year = 1997, volume = 102, number = {C4}, doi = {10.1029/96JC03744}, pages = {8691--8702} } @Article{zha98a, author = {Zhang, J. and W.D. Hibler, III and M. Steele and D.A. Rothrock}, title = {Arctic ice-ocean modeling with and without climate restoring}, journal = jpo, year = 1998, volume = 28, pages = {191--217} } @Article{zhouetal:95, author = {Zhou, J. and Y.C. Sud and K.-M. Lau}, year = {1995}, title = {Impact of Orographically Induced Gravity Wave Drag in the GLA GCM}, journal = qjrms, volume = {122}, pages = {903-927} }